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Sample GSM795357 Query DataSets for GSM795357
Status Public on Jun 10, 2012
Title Cholangiocarcinoma B3_7138
Sample type genomic
Source name Genomic DNA from Cholangiocarcinoma B3_7138
Organism Homo sapiens
Characteristics disease: cholangiocarcinoma
idh1/2 genotype: IDH1mutant
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using the QIAamp DNA mini kit, according to the manufacturer's protocol
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
Hybridization protocol Genomic DNA was bisulfite converted with the Zymo Research EZ DNA Methylation kit. Bisulfite converted DNA was amplified, fragmented and hybridized to Illumina Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol BeadChips were imaged with the Illumina HiScan scanner using standard settings
Description B3_7138
Data processing Mean background-corrected and normalized signal intensities of the methylation (M) and unmethylated (U) estimates for each CpG locus were extracted using Illumina BeadStudio software
Submission date Sep 13, 2011
Last update date Jun 10, 2012
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL13534
Series (2)
GSE32079 Mutations in IDH1 and IDH2 are associated with DNA hypermethylation in intrahepatic cholangiocarcinomas
GSE32286 DNA hypermethylation in intrahepatic cholangiocarcinomas and glioblastomas

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE B3_7138.Detection
cg00000029 0.63458 0
cg00000108 0.85257 0
cg00000109 0.79498 0
cg00000165 0.62137 0
cg00000236 0.798 0
cg00000289 0.615 0
cg00000292 0.78258 0
cg00000321 0.53754 0
cg00000363 0.31033 0
cg00000622 0.06093 0
cg00000658 0.78736 0
cg00000714 0.20946 0
cg00000721 0.83064 0
cg00000734 0.14595 0
cg00000769 0.10166 0
cg00000807 0.74565 0
cg00000884 0.74772 0
cg00000905 0.18515 0
cg00000924 0.65824 0
cg00000948 0.8259 0

Total number of rows: 485577

Table truncated, full table size 9915 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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