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Sample GSM795 Query DataSets for GSM795
Status Public on Feb 12, 2002
Title CGH_Albertson_GM00143-010220
Sample type genomic
 
Channel 1
Source name Cell line GM00143
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM00143
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM00143
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Biomaterial provider Coriell
Extracted molecule genomic DNA
 
 
Description Coriell Cell Repositories cell line http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM00143
Fibroblast cell line derived from a 3 month old female. Trisomy 18 is present.
Karyotype is 47,XX,+18
 
Submission date Jan 17, 2002
Last update date Nov 30, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 1.02924 0.022007 3
2 0
3 -0.000611 0.999576 0.01215 3
4 0.009026 1.006276 0.007098 3
5 -0.000757 0.999476 0.012997 3
6 0
7 0.002577 1.001788 0.006239 3
8 0.065711 1.046601 0.016746 2
9 0.06144 1.043507 0.003105 3
10 -0.030617 0.979002 0.011601 3
11 -0.03099 0.978749 0.01001 3
12 0.061706 1.043699 0.012555 3
13 0.015352 1.010698 0.003855 3
14 0.0659 1.046738 0.013785 3
15 -0.013288 0.990832 0.019557 3
16 0.062979 1.04462 0.010708 3
17 0.055966 1.039555 0.013265 3
18 0.187236 1.13858 0.014209 2
19 0.061624 1.04364 0.016458 3
20 -0.028936 0.980143 0.023519 3

Total number of rows: 2463

Table truncated, full table size 76 Kbytes.




Supplementary data files not provided
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