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Sample GSM7877286 Query DataSets for GSM7877286
Status Public on Mar 01, 2024
Title week 6 aristolochic acid_FB
Sample type SRA
 
Source name kidney
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: kidney
cell type: Cd45+ FACS immune cells
gender: male
disease state: Chronic kidney disease/ transition of acute kidney injury-to-chronic kidney disease
Extracted molecule polyA RNA
Extraction protocol Cells were isolated, tagged with hashing antibodies, and combined (week 2 samples combined and week 6 samples combined separately) for multiplex sequencing, and sequenced per 10x genomics instruction.
 
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Description 10X Genomics
W6_1 was B0301, W6_2 was B0302, W6_3 was B0303
Data processing Libraries were multiplex sequenced and processed following 10X Genomics protocol for CellRanger.
Assembly: mm10
 
Submission date Nov 01, 2023
Last update date Mar 01, 2024
Contact name Kyle Hartley Moore
E-mail(s) kylemoore@uabmc.edu
Organization name University of Alabama at Birmingham
Department Division of Nephrology
Lab Anupam Agarwal
Street address 703 19th St. S.
City Birmingham
State/province Alabama
ZIP/Postal code 35294
Country USA
 
Platform ID GPL24247
Series (1)
GSE246803 Cognate antigen-independent differentiation of resident memory t cells in chronic kidney disease
Relations
BioSample SAMN38066137
SRA SRX22333082

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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