|
| Status |
Public on Mar 01, 2024 |
| Title |
week 2 aristolochic acid_FB |
| Sample type |
SRA |
| |
|
| Source name |
kidney
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue: kidney
cell type: Cd45+ FACS immune cells
gender: male
disease state: Chronic kidney disease/ transition of acute kidney injury-to-chronic kidney disease
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Cells were isolated, tagged with hashing antibodies, and combined (week 2 samples combined and week 6 samples combined separately) for multiplex sequencing, and sequenced per 10x genomics instruction.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
10X Genomics
W2_1 was B0301, W2_2 was B0302, W2_3 was B0303
|
| Data processing |
Libraries were multiplex sequenced and processed following 10X Genomics protocol for CellRanger.
Assembly: mm10
|
| |
|
| Submission date |
Nov 01, 2023 |
| Last update date |
Mar 01, 2024 |
| Contact name |
Kyle Hartley Moore |
| E-mail(s) |
kylemoore@uabmc.edu
|
| Organization name |
University of Alabama at Birmingham
|
| Department |
Division of Nephrology
|
| Lab |
Anupam Agarwal
|
| Street address |
703 19th St. S.
|
| City |
Birmingham |
| State/province |
Alabama |
| ZIP/Postal code |
35294 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE246803 |
Cognate antigen-independent differentiation of resident memory t cells in chronic kidney disease |
|
| Relations |
| BioSample |
SAMN38066139 |
| SRA |
SRX22333080 |
