|
| Status |
Public on Jun 06, 2024 |
| Title |
ALD216A2 (Set1) |
| Sample type |
SRA |
| |
|
| Source name |
retina
|
| Organism |
Mus musculus |
| Characteristics |
tissue: retina
age: E14.5
genotype: WT
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Two replicates of E14.5 WT retina were dissociated
Libraries were processed for sc-ATAC-Seq analysis according to 10X genomics protocol.
single-cell ATAC-seq by 10X genomics
|
| |
|
| Library strategy |
ATAC-seq |
| Library source |
genomic single cell |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
scATAC-seq
|
| Data processing |
Data pre-processing (demultiplexing and ATAC peak counting) was analyzed by 10X CellRanger software
Assembly: mm10
Supplementary files format and content: Tab-separated value files and matrix files
|
| |
|
| Submission date |
Oct 17, 2023 |
| Last update date |
Jun 06, 2024 |
| Contact name |
Shuchang Liu |
| E-mail(s) |
shl96@pitt.edu
|
| Organization name |
University of Pittsburgh
|
| Street address |
203 Lothrop Street
|
| City |
Pittsburgh |
| State/province |
PA |
| ZIP/Postal code |
15261 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (2) |
| GSE245538 |
A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis [Set1.Sc-ATAC-Seq retina E14.5 WT retina] |
| GSE245549 |
A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis |
|
| Relations |
| BioSample |
SAMN37855854 |
| SRA |
SRX22112532 |
