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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 13, 2023 |
| Title |
MM4_KO_Candida_Rep1 |
| Sample type |
SRA |
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| Source name |
J2 iBMDM
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| Organism |
Mus musculus |
| Characteristics |
cell line: J2 iBMDM
cell type: macrophage
genotype: c57bl6 ire1 null
treatment: Candida
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
trizol, DNAse treatment with TurboDNAse, phenol chloroform
poly A enrichment
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
Galaxy suite - FastQC, CutAdapt, KallistoQuant, DEseq2
Assembly: GRCm38B
Supplementary files format and content: tabular counts (Kallisto format)
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| Submission date |
Sep 28, 2023 |
| Last update date |
Nov 13, 2023 |
| Contact name |
Teresa O'Meara |
| E-mail(s) |
tromeara@umich.edu
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| Organization name |
University of Michigan
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| Department |
Microbiology and Immunology
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| Street address |
1150 W. Medical Center Dr
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| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109 |
| Country |
USA |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE244303 |
Non-canonical activation of IRE1α during Candida albicans infection enhances macrophage fungicidal activity |
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| Relations |
| BioSample |
SAMN37595664 |
| SRA |
SRX21923956 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM7813202_Galaxy371-_MM4_KO_Candida_Total-1_.tabular.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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