|
| Status |
Public on Sep 27, 2023 |
| Title |
MIP Mouse SVZ p7 |
| Sample type |
SRA |
| |
|
| Source name |
subventricular zone
|
| Organism |
Mus musculus |
| Characteristics |
sample type: MIP (modeled intestinal perforation)
|
| Treatment protocol |
SVZ was removed and snap frozen with liquid N2 and stored at -80 until processed
|
| Growth protocol |
Standard mouse breeding
|
| Extracted molecule |
total RNA |
| Extraction protocol |
nuclear isolation from tissue
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Basecalling and fastq files generated using 10X Cellranger v5.0.1 with default parameters
Alignment, counting and filtering of single cell RNA-Seq samples:- Control and MIP using 10X Cellranger v5.0.1 with default parameters.
Assembly: mm10-2020-A
Supplementary files format and content: raw read counts in gene-barcode matrix
|
| |
|
| Submission date |
Sep 21, 2023 |
| Last update date |
Sep 27, 2023 |
| Contact name |
Adrian Aryeh Epstein |
| E-mail(s) |
adrian.epstein@duke.edu
|
| Organization name |
Duke Univeristy School of Medicine
|
| Department |
Pediatrics
|
| Lab |
Duke Molecular Physiology Institute
|
| Street address |
300 N Duke St
|
| City |
Durham |
| State/province |
NC |
| ZIP/Postal code |
27701 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE243778 |
Postnatal Subventricular Zone Injury Predicts Motor Impairment in Preterm Infants Following Intestinal Disease |
|
| Relations |
| BioSample |
SAMN37497921 |
| SRA |
SRX21852569 |
