|
| Status |
Public on Sep 07, 2023 |
| Title |
ChIA-PET from embryonic stem cell (ENCLB129WQY) |
| Sample type |
SRA |
| |
|
| Source name |
Mus musculus strain 129S1CastF1 male embryo embryonic stem primary cell
|
| Organism |
Mus musculus |
| Characteristics |
antibody: POLR2A
cell_type: embryonic stem cell
biomaterial_type: primary cell
biosample encode accession: ENCBS206CFD (SAMN37186640)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS206CFD
Sex: male
dev stage: embryonic
age: unknown
donor_id: ENCDO755FNZ
lab: Charles Lee
source: The Jackson Laboratory
link: ENCBS206CFD at ENCODE; https://www.encodeproject.org/ENCBS206CFD/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/f7779792-9403-4396-9ff6-8e859edd608c/@@download/attachment/In-situ%20chiapet_Ruan%20Lab_final.pdf
|
| |
|
| Library strategy |
ChIA-PET |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR309NAP/
***************
biological replicate number: 2
technical replicate number: 1
description: RNAPII ChIA-PET in 129S1CastF1
experiment encode accession: ENCSR309NAP
assay title: ChIA-PET
assembly: mm10
encode release date: 2022-01-21
lab: Charles Lee
library encode accession: ENCLB129WQY
fragmentation methods: sonication (Branson Sonifier 250)
size range: 350-600
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Sep 07, 2023 |
| Last update date |
Sep 09, 2023 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE242586 |
ChIA-PET from embryonic stem cell (ENCSR309NAP) |
|
| Relations |
| BioSample |
SAMN37186640 |
| SRA |
SRX21674798 |
