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Sample GSM7734666 Query DataSets for GSM7734666
Status Public on Mar 04, 2024
Title MOLM13 cells replicate 3
Sample type SRA
 
Source name MOLM13 cells
Organism Homo sapiens
Characteristics cell type: MOLM13 cells
Extracted molecule genomic DNA
Extraction protocol ATAC-seq libraries were prepared in 3 experimental replicates according to the OMNI-ATAC protocol by Corces et al. Corces MR, Trevino AE, Hamilton EG, Greenside PG, Sinnott-Armstrong NA, Vesuna S et al. An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues. Nature methods 2017; 14: 959-962.
 
Library strategy ATAC-seq
Library source genomic
Library selection other
Instrument model Illumina NovaSeq 6000
 
Description MOLM13_R3
Data processing Reads trimmed for adapter sequence
Reads mapped to rn6 genome using Bowtie2
Aligned reads shifted to accommodate Tn5 footprint
Peaks called by macs
Differential accessibility done in DiffBind
Assembly: hg38
Supplementary files format and content: Normalized read count table generated
 
Submission date Aug 25, 2023
Last update date Mar 04, 2024
Contact name Kimberly E Stephens
E-mail(s) kestephens@uams.edu
Phone 501-364-3307
Organization name University of Arkansas for Medical Sciences
Department Pediatrics
Street address 13 Children's Way
City Little Rock
State/province AR
ZIP/Postal code 72202
Country USA
 
Platform ID GPL24676
Series (1)
GSE241738 Enhancer-activated RET confers protection against oxidative stress to the MLL-rearranged acute myeloid leukemia cells
Relations
BioSample SAMN37182148
SRA SRX21499406

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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