|
| Status |
Public on Jul 23, 2024 |
| Title |
cortex_rep8_lib1 |
| Sample type |
SRA |
| |
|
| Source name |
brain
|
| Organism |
Mus musculus |
| Characteristics |
region: cortex
tissue: brain
strain: C57BL/6N
Sex: male
genotype: WT
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
microdissection, papain dissociation, ovomucoid gradient separation of single cells, inDrops single cell encapsulation
inDrops v3
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
bc-bio nextgen indrops3 (default settings); See https://bcbio-nextgen.readthedocs.io/en/latest/contents/single_cell.html
Assembly: mm10
Supplementary files format and content: compressed csv, abundance measurements with cell labels
|
| |
|
| Submission date |
Aug 18, 2023 |
| Last update date |
Jul 23, 2024 |
| Contact name |
Sarah Pfau |
| E-mail(s) |
Sarah_Pfau@hms.harvard.edu
|
| Organization name |
Harvard Medical School
|
| Street address |
220 Longwood Avenue
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE160519 |
Vascular and perivascular cell profiling reveals the molecular and cellular bases of blood-brain barrier heterogeneity [scRNA-Seq] |
| GSE241206 |
Vascular and perivascular cell profiling reveals the molecular and cellular bases of blood-brain barrier heterogeneity |
|
| Relations |
| BioSample |
SAMN37047062 |
| SRA |
SRX21414367 |
