|
Status |
Public on Jul 23, 2024 |
Title |
cortex_rep3_lib2 |
Sample type |
SRA |
|
|
Source name |
brain
|
Organism |
Mus musculus |
Characteristics |
region: cortex tissue: brain strain: C57BL/6N Sex: male genotype: WT
|
Extracted molecule |
polyA RNA |
Extraction protocol |
microdissection, papain dissociation, ovomucoid gradient separation of single cells, inDrops single cell encapsulation inDrops v3
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic single cell |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
|
|
Data processing |
bc-bio nextgen indrops3 (default settings); See https://bcbio-nextgen.readthedocs.io/en/latest/contents/single_cell.html Assembly: mm10 Supplementary files format and content: compressed csv, abundance measurements with cell labels
|
|
|
Submission date |
Aug 18, 2023 |
Last update date |
Jul 23, 2024 |
Contact name |
Sarah Pfau |
E-mail(s) |
Sarah_Pfau@hms.harvard.edu
|
Organization name |
Harvard Medical School
|
Street address |
220 Longwood Avenue
|
City |
Boston |
State/province |
MA |
ZIP/Postal code |
02115 |
Country |
USA |
|
|
Platform ID |
GPL19057 |
Series (2) |
GSE160519 |
Vascular and perivascular cell profiling reveals the molecular and cellular bases of blood-brain barrier heterogeneity [scRNA-Seq] |
GSE241206 |
Vascular and perivascular cell profiling reveals the molecular and cellular bases of blood-brain barrier heterogeneity |
|
Relations |
BioSample |
SAMN37047053 |
SRA |
SRX21414358 |