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Sample GSM7719336 Query DataSets for GSM7719336
Status Public on Jul 23, 2024
Title cortex_rep3_lib2
Sample type SRA
 
Source name brain
Organism Mus musculus
Characteristics region: cortex
tissue: brain
strain: C57BL/6N
Sex: male
genotype: WT
Extracted molecule polyA RNA
Extraction protocol microdissection, papain dissociation, ovomucoid gradient separation of single cells, inDrops single cell encapsulation
inDrops v3
 
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing bc-bio nextgen indrops3 (default settings); See https://bcbio-nextgen.readthedocs.io/en/latest/contents/single_cell.html
Assembly: mm10
Supplementary files format and content: compressed csv, abundance measurements with cell labels
 
Submission date Aug 18, 2023
Last update date Jul 23, 2024
Contact name Sarah Pfau
E-mail(s) Sarah_Pfau@hms.harvard.edu
Organization name Harvard Medical School
Street address 220 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL19057
Series (2)
GSE160519 Vascular and perivascular cell profiling reveals the molecular and cellular bases of blood-brain barrier heterogeneity [scRNA-Seq]
GSE241206 Vascular and perivascular cell profiling reveals the molecular and cellular bases of blood-brain barrier heterogeneity
Relations
BioSample SAMN37047053
SRA SRX21414358

Supplementary file Size Download File type/resource
GSM7719336_Sample_6_counts_renamed.csv.gz 9.2 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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