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Sample GSM7707602 Query DataSets for GSM7707602
Status Public on Jun 24, 2024
Title RO
Sample type SRA
 
Source name blood
Organism Mus musculus
Characteristics tissue: blood
cell type: hematopoietic stem cells
treatment: RO-3066
Extracted molecule total RNA
Extraction protocol HSCs in suspension cultured in RO-3066 and DMSO were collected for scRNA sequencing
Sequencing libraries were prepared using 10x Genomics Single Cell Gene Expression 3’ workflow
 
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Description 10x Genomics
Data processing The demultiplexing, barcoded processing, gene counting and aggregation were made using the cell ranger version 5.0.1 for each sample
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files
 
Submission date Aug 11, 2023
Last update date Jun 24, 2024
Contact name Hans-Willem Snoeck
E-mail(s) hs2680@cumc.columbia.edu
Organization name Columbia University Irving Medical Centre
Street address 650 west 168th street
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL24247
Series (1)
GSE240695 DNA damage primes hematopoietic stem cells for megakaryopoiesis
Relations
BioSample SAMN36952210
SRA SRX21346759

Supplementary file Size Download File type/resource
GSM7707602_RO_barcodes.tsv.gz 20.4 Kb (ftp)(http) TSV
GSM7707602_RO_features.tsv.gz 284.1 Kb (ftp)(http) TSV
GSM7707602_RO_matrix.mtx.gz 78.7 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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