|
| Status |
Public on Aug 10, 2023 |
| Title |
HTx020Mp12F, snRNA |
| Sample type |
SRA |
| |
|
| Source name |
Mammary Gland
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Mammary Gland
strain: B6.FVB-Tg(MMTV-PyVT) 634Mul/LellJ (Strain #:022974)
Sex: female
age: 12 weeks
|
| Extracted molecule |
total RNA |
| Extraction protocol |
dx.doi.org/10.17504/protocols.io.261gednx7v47/v1
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Kits
snRNAseq/snATACseq Multiome Protocol
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
10x genomics
|
| Data processing |
cellranger-arc-2.0.0 (https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/installation)
Assembly: refdat a-cellranger-arc-mm10-2020-A-2.0.0
Supplementary files format and content: Tab-separated values files and matrix files
|
| |
|
| Submission date |
Aug 10, 2023 |
| Last update date |
Aug 10, 2023 |
| Contact name |
Li Ding |
| E-mail(s) |
lding@wustl.edu
|
| Organization name |
Washington University in St. Louis
|
| Street address |
660 S. Euclid Avenue
|
| City |
Saint Louis |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE240577 |
Differential chromatin accessibility and transcriptional dynamics define breast cancer subtypes and their lineages |
|
| Relations |
| BioSample |
SAMN36939556 |
| SRA |
SRX21332100 |
