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Sample GSM769028 Query DataSets for GSM769028
Status Public on Jul 30, 2011
Title LICR_ChipSeq_MEF_H3K4me1
Sample type SRA
Source name MEF
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: ChIP-Seq
cell: MEF
cell organism: mouse
cell description: Mouse Embryonic Fibroblast
cell sex: M
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: adult-8wks
age description: Adult 8 weeks
control: std
control description: Standard input signal for most experiments.
controlid: MEF/Input/std
labversion: 05/19/09 Lane 4
replicate: 1
replicate description: tier 1
softwareversion: ELAND
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider LICR lab
Growth protocol MEF_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Jul 29, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX085451
BioSample SAMN00690343
Named Annotation GSM769028_wgEncodeLicrHistoneMefH3k4me1MAdult8wksC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM769028_wgEncodeLicrHistoneMefH3k4me1MAdult8wksC57bl6StdPk.broadPeak.gz 1.3 Mb (ftp)(http) BROADPEAK
GSM769028_wgEncodeLicrHistoneMefH3k4me1MAdult8wksC57bl6StdSig.bigWig 58.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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