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Sample GSM769028 Query DataSets for GSM769028
Status Public on Jul 30, 2011
Title LICR_ChipSeq_MEF_H3K4me1
Sample type SRA
 
Source name MEF
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: ChIP-Seq
cell: MEF
cell organism: mouse
cell description: Mouse Embryonic Fibroblast
cell sex: M
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: adult-8wks
age description: Adult 8 weeks
control: std
control description: Standard input signal for most experiments.
controlid: MEF/Input/std
labversion: 05/19/09 Lane 4
replicate: 1
replicate description: tier 1
softwareversion: ELAND
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider LICR lab
Growth protocol MEF_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Submission date Jul 29, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (3)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX085451
BioSample SAMN00690343
Named Annotation GSM769028_wgEncodeLicrHistoneMefH3k4me1MAdult8wksC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM769028_wgEncodeLicrHistoneMefH3k4me1MAdult8wksC57bl6StdPk.broadPeak.gz 1.3 Mb (ftp)(http) BROADPEAK
GSM769028_wgEncodeLicrHistoneMefH3k4me1MAdult8wksC57bl6StdSig.bigWig 58.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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