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Sample GSM751078 Query DataSets for GSM751078
Status Public on Oct 25, 2012
Title Ovarian cancer tissue from Taiwan LB625
Sample type genomic
 
Source name Ovarian Cancer tissue
Organism Homo sapiens
Characteristics histotype: Mucinous
Extracted molecule genomic DNA
Extraction protocol Tumor genomic DNAs were extracted by using phenol-chloroform extraction method. Tumor RNAs were extracted by using Qiazol followed by column clean-up using miRNeasy kit (Qiagen).
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol Affymetrix standard procedure
Description Epithelial ovarian cancers
primary_data_description: Log relative ratio calclulated by Affymetric Genotyping Console
Data processing CEL files and CHP files are processed and normalized with Hapmap CHB using the Affymetric Genotyping Console.
 
Submission date Jun 29, 2011
Last update date Oct 25, 2012
Contact name Liang Goh
E-mail(s) liang.goh@duke-nus.edu.sg
Organization name Duke-NUS graduate medical school
Street address College Road
City Singapore
ZIP/Postal code 169857
Country Singapore
 
Platform ID GPL6801
Series (2)
GSE30300 The histotype-specific copy-number landscape of ovarian cancer (copy number SNP)
GSE30311 The histotype-specific copy-number landscape of ovarian cancer

Data table header descriptions
ID_REF
VALUE CN STATE
LOG2 RATIO
SMOOTH SIGNAL
LOH
ALLELE DIFFERENCE

Data table
ID_REF VALUE LOG2 RATIO SMOOTH SIGNAL LOH ALLELE DIFFERENCE
CN_473963 3.000000 0.076091 2.679188 nan nan
CN_473964 3.000000 0.150218 2.679341 nan nan
CN_473965 3.000000 0.173549 2.679372 nan nan
CN_473981 3.000000 0.302158 2.681676 nan nan
CN_473982 3.000000 -0.078478 2.681712 nan nan
CN_497981 3.000000 0.024803 2.702558 nan nan
CN_502615 3.000000 0.352412 2.730808 nan nan
CN_502613 3.000000 0.464936 2.730942 nan nan
CN_502614 3.000000 0.471481 2.731645 nan nan
CN_502616 3.000000 0.470242 2.731682 nan nan
CN_502843 3.000000 0.266495 2.758161 nan nan
CN_466171 3.000000 1.027280 2.527179 nan nan
CN_468414 3.000000 0.528295 2.527287 nan nan
CN_468412 3.000000 -0.202768 2.527312 nan nan
CN_468413 3.000000 -0.330063 2.527316 nan nan
CN_470565 3.000000 -0.441753 2.527448 nan nan
CN_468424 3.000000 0.290761 2.529250 nan nan
CN_468425 3.000000 0.444867 2.529267 nan nan
CN_460512 3.000000 0.007908 2.810279 nan nan
CN_460513 3.000000 0.537589 2.810281 nan nan

Total number of rows: 1813441

Table truncated, full table size 93677 Kbytes.




Supplementary file Size Download File type/resource
GSM751078.CEL.gz 30.4 Mb (ftp)(http) CEL
GSM751078.CNCHP.gz 34.9 Mb (ftp)(http) CNCHP
Processed data included within Sample table

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