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Sample GSM751062 Query DataSets for GSM751062
Status Public on Oct 25, 2012
Title Ovarian cancer tissue from Taiwan LD041
Sample type genomic
 
Source name Ovarian Cancer tissue
Organism Homo sapiens
Characteristics histotype: Serous
Extracted molecule genomic DNA
Extraction protocol Tumor genomic DNAs were extracted by using phenol-chloroform extraction method. Tumor RNAs were extracted by using Qiazol followed by column clean-up using miRNeasy kit (Qiagen).
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol Affymetrix standard procedure
Description Epithelial ovarian cancers
primary_data_description: Log relative ratio calclulated by Affymetric Genotyping Console
Data processing CEL files and CHP files are processed and normalized with Hapmap CHB using the Affymetric Genotyping Console.
 
Submission date Jun 29, 2011
Last update date Oct 25, 2012
Contact name Liang Goh
E-mail(s) liang.goh@duke-nus.edu.sg
Organization name Duke-NUS graduate medical school
Street address College Road
City Singapore
ZIP/Postal code 169857
Country Singapore
 
Platform ID GPL6801
Series (2)
GSE30300 The histotype-specific copy-number landscape of ovarian cancer (copy number SNP)
GSE30311 The histotype-specific copy-number landscape of ovarian cancer

Data table header descriptions
ID_REF
VALUE CN STATE
LOG2 RATIO
SMOOTH SIGNAL
LOH
ALLELE DIFFERENCE

Data table
ID_REF VALUE LOG2 RATIO SMOOTH SIGNAL LOH ALLELE DIFFERENCE
CN_473963 2.000000 -0.017538 2.155921 nan nan
CN_473964 2.000000 0.052024 2.156038 nan nan
CN_473965 2.000000 -0.088434 2.156062 nan nan
CN_473981 2.000000 -0.071572 2.157822 nan nan
CN_473982 2.000000 -0.022502 2.157850 nan nan
CN_497981 2.000000 -0.265218 2.173820 nan nan
CN_502615 2.000000 0.006735 2.195579 nan nan
CN_502613 2.000000 0.266582 2.195682 nan nan
CN_502614 2.000000 0.287229 2.196226 nan nan
CN_502616 2.000000 0.517999 2.196254 nan nan
CN_502843 2.000000 0.091503 2.216772 nan nan
CN_466171 2.000000 0.810419 3.082197 nan nan
CN_468414 2.000000 0.282929 3.082268 nan nan
CN_468412 2.000000 -0.116023 3.082284 nan nan
CN_468413 2.000000 0.297127 3.082287 nan nan
CN_470565 2.000000 0.291747 3.082373 nan nan
CN_468424 2.000000 0.348429 3.083544 nan nan
CN_468425 2.000000 0.514666 3.083555 nan nan
CN_460512 2.000000 0.497619 3.274688 nan nan
CN_460513 2.000000 0.293154 3.274688 nan nan

Total number of rows: 1813441

Table truncated, full table size 93573 Kbytes.




Supplementary file Size Download File type/resource
GSM751062.CEL.gz 30.5 Mb (ftp)(http) CEL
GSM751062.CNCHP.gz 34.6 Mb (ftp)(http) CNCHP
Processed data included within Sample table

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