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Sample GSM751058 Query DataSets for GSM751058
Status Public on Oct 25, 2012
Title Ovarian cancer tissue from Taiwan LB630
Sample type genomic
 
Source name Ovarian Cancer tissue
Organism Homo sapiens
Characteristics histotype: Serous
Extracted molecule genomic DNA
Extraction protocol Tumor genomic DNAs were extracted by using phenol-chloroform extraction method. Tumor RNAs were extracted by using Qiazol followed by column clean-up using miRNeasy kit (Qiagen).
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol Affymetrix standard procedure
Description Epithelial ovarian cancers
primary_data_description: Log relative ratio calclulated by Affymetric Genotyping Console
Data processing CEL files and CHP files are processed and normalized with Hapmap CHB using the Affymetric Genotyping Console.
 
Submission date Jun 29, 2011
Last update date Oct 25, 2012
Contact name Liang Goh
E-mail(s) liang.goh@duke-nus.edu.sg
Organization name Duke-NUS graduate medical school
Street address College Road
City Singapore
ZIP/Postal code 169857
Country Singapore
 
Platform ID GPL6801
Series (2)
GSE30300 The histotype-specific copy-number landscape of ovarian cancer (copy number SNP)
GSE30311 The histotype-specific copy-number landscape of ovarian cancer

Data table header descriptions
ID_REF
VALUE CN STATE
LOG2 RATIO
SMOOTH SIGNAL
LOH
ALLELE DIFFERENCE

Data table
ID_REF VALUE LOG2 RATIO SMOOTH SIGNAL LOH ALLELE DIFFERENCE
CN_473963 3.000000 0.509600 3.180325 nan nan
CN_473964 3.000000 0.387650 3.180109 nan nan
CN_473965 3.000000 0.226502 3.180064 nan nan
CN_473981 3.000000 0.909682 3.176814 nan nan
CN_473982 3.000000 0.568793 3.176764 nan nan
CN_497981 3.000000 0.543495 3.147714 nan nan
CN_502615 3.000000 -0.161016 3.109357 nan nan
CN_502613 3.000000 0.162706 3.109178 nan nan
CN_502614 3.000000 0.113371 3.108238 nan nan
CN_502616 3.000000 0.330623 3.108189 nan nan
CN_502843 3.000000 0.392970 3.073314 nan nan
CN_466171 2.000000 0.490859 1.808319 nan nan
CN_468414 2.000000 -0.398313 1.808380 nan nan
CN_468412 2.000000 -0.691753 1.808394 nan nan
CN_468413 2.000000 0.075877 1.808397 nan nan
CN_470565 2.000000 -0.113275 1.808471 nan nan
CN_468424 2.000000 -0.030289 1.809479 nan nan
CN_468425 2.000000 0.103639 1.809489 nan nan
CN_460512 2.000000 0.474076 3.359338 nan nan
CN_460513 2.000000 0.357628 3.359337 nan nan

Total number of rows: 1813441

Table truncated, full table size 93631 Kbytes.




Supplementary file Size Download File type/resource
GSM751058.CEL.gz 31.4 Mb (ftp)(http) CEL
GSM751058.CNCHP.gz 34.5 Mb (ftp)(http) CNCHP
Processed data included within Sample table

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