|
| Status |
Public on Dec 29, 2023 |
| Title |
2-10_C |
| Sample type |
SRA |
| |
|
| Source name |
Saliva
|
| Organism |
Homo sapiens |
| Characteristics |
condition: Healthy Subject
anatomical location: Oral cavity structure
rna source: total cell-free biofluid RNA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA Isolation method was . RNA Isolation kit was Plasma/Serum Circulating and Exosomal RNA Purification Kit(Norgen Biotek).
Library construction kit was NEBNext small RNA library prep (NEB). Samples were multiplexed. Type of Starting Material was total RNA.
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
Plasma/Serum Circulating and Exosomal RNA Purification Kit(Norgen Biotek)
|
| Data processing |
All FASTQ files were processed uniformly through the extra-cellular RNA processing toolkit (exceRpt). Information about exceRpt is available at https://github.gersteinlab.org/exceRpt/.
Assembly: hg19
Supplementary files format and content: Each processed data file is a core results archive generated by exceRpt. The core results archive contains read counts for alignments to the different transcriptome libraries used by exceRpt (miRNA / piRNA / tRNA / GENCODE annotations / circRNA), taxonomy trees for exogenous rRNA and genomic reads aligned by exceRpt, and a variety of other files generated by exceRpt.
|
| |
|
| Submission date |
Jun 20, 2023 |
| Last update date |
Dec 29, 2023 |
| Contact name |
exRNA BRL |
| Organization name |
Baylor College of Medicine
|
| Department |
Molecular & Human Genetics - Milosavljevic
|
| Lab |
Bioinformatics Research Laboratory
|
| Street address |
One Baylor Plaza
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL20301 |
| Series (1) |
| GSE235349 |
Rigor and Reproducibility of Acoustofluidics of saliva from healthy donors |
|
| Relations |
| BioSample |
SAMN35811041 |
| SRA |
SRX20730277 |
