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Sample GSM749707 Query DataSets for GSM749707
Status Public on Jun 29, 2011
Title Stam_NHEK_CTCF_1
Sample type SRA
Source name NHEK
Organism Homo sapiens
Characteristics cell: NHEK
cell organism: Human
cell description: epidermal keratinocytes
cell karyotype: normal
cell lineage: ectoderm
cell sex: F
antibody: CTCF
antibody description: rabbit polyclonal
antibody target description: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name: Millipore
replicate: 1
Biomaterial provider Lonza
Growth protocol Cells were grown according to ENCODE cell culture protocols:
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX080370
BioSample SAMN00631388
Named Annotation GSM749707_hg19_wgEncodeUwTfbsNhekCtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM749707_hg19_wgEncodeUwTfbsNhekCtcfStdAlnRep1.bam 402.9 Mb (ftp)(http) BAM
GSM749707_hg19_wgEncodeUwTfbsNhekCtcfStdHotspotsRep1.broadPeak.gz 2.0 Mb (ftp)(http) BROADPEAK
GSM749707_hg19_wgEncodeUwTfbsNhekCtcfStdPkRep1.narrowPeak.gz 801.6 Kb (ftp)(http) NARROWPEAK
GSM749707_hg19_wgEncodeUwTfbsNhekCtcfStdRawRep1.bigWig 50.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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