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Sample GSM749677 Query DataSets for GSM749677
Status Public on Jun 29, 2011
Title Stam_BJ_CTCF_1
Sample type SRA
Source name BJ
Organism Homo sapiens
Characteristics cell: BJ
cell organism: Human
cell description: skin fibroblast, "The line was established from skin taken from normal foreskin." - ATCC. (PMID: 9916803)
cell karyotype: normal
cell lineage: ectoderm
cell sex: M
antibody: CTCF
antibody description: rabbit polyclonal
antibody target description: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name: Millipore
replicate: 1
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols:
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX080340
BioSample SAMN00631357
Named Annotation GSM749677_hg19_wgEncodeUwTfbsBjCtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM749677_hg19_wgEncodeUwTfbsBjCtcfStdAlnRep1.bam 722.7 Mb (ftp)(http) BAM
GSM749677_hg19_wgEncodeUwTfbsBjCtcfStdHotspotsRep1.broadPeak.gz 2.1 Mb (ftp)(http) BROADPEAK
GSM749677_hg19_wgEncodeUwTfbsBjCtcfStdPkRep1.narrowPeak.gz 819.4 Kb (ftp)(http) NARROWPEAK
GSM749677_hg19_wgEncodeUwTfbsBjCtcfStdRawRep1.bigWig 98.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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