|
| Status |
Public on Jun 03, 2024 |
| Title |
#2BQ0268 Plasma |
| Sample type |
SRA |
| |
|
| Source name |
Plasma
|
| Organism |
Homo sapiens |
| Characteristics |
condition: Healthy Subject
anatomical location: Entire cardiovascular system
rna source: total cell-free biofluid RNA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA Isolation method was . RNA Isolation kit was Homebrew Kit.
Library construction kit was Homebrew Kit. Samples were multiplexed. Type of Starting Material was total RNA.
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
#2BQ0268
|
| Data processing |
All FASTQ files were processed uniformly through the extra-cellular RNA processing toolkit (exceRpt). Information about exceRpt is available at https://github.gersteinlab.org/exceRpt/.
Assembly: hg19
Supplementary files format and content: Each processed data file is a core results archive generated by exceRpt. The core results archive contains read counts for alignments to the different transcriptome libraries used by exceRpt (miRNA / piRNA / tRNA / GENCODE annotations / circRNA), taxonomy trees for exogenous rRNA and genomic reads aligned by exceRpt, and a variety of other files generated by exceRpt.
|
| |
|
| Submission date |
Jun 13, 2023 |
| Last update date |
Jun 03, 2024 |
| Contact name |
Kai Wang |
| E-mail(s) |
kwang@systemsbiology.org
|
| Organization name |
Institute for Systems Biology
|
| Street address |
401 Terry Ave N
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Platform ID |
GPL18573 |
| Series (1) |
| GSE234842 |
Small RNA profile of 2 biofluids from healthy individuals |
|
| Relations |
| BioSample |
SAMN35726902 |
| SRA |
SRX20672918 |
