|
| Status |
Public on Jan 31, 2024 |
| Title |
Group House Sed Cohort 1 |
| Sample type |
SRA |
| |
|
| Source name |
Brain
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Brain
cell type: PL mPFC
genotype: C57BL/6
Sex: Male
gestational day: P21
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNeasy kit
PL mPFC was dissected from mice and RNA extracted using Qiagen RNeasy Micro kit
Libraries were constructed according to manufacterer protocols by the Weill Cornell Epigenomics Core using the Chromium Single Cell 3' Reagent V3 kit.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
10X Genomics
|
| Data processing |
Brain: Raw sequencing data was processed using the CellRanger v6.0.0 pipeline.
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files
|
| |
|
| Submission date |
Jun 12, 2023 |
| Last update date |
Jan 31, 2024 |
| Contact name |
Miklos Toth |
| E-mail(s) |
mtoth@med.cornell.edu
|
| Organization name |
Weill Cornell Medicine
|
| Street address |
1300 York Ave
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE234726 |
Single cell transcriptomic representation of social dominance in prefrontal cortex and the influence of preweaning maternal and postweaning social environment |
|
| Relations |
| BioSample |
SAMN35717898 |
| SRA |
SRX20663336 |
