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Sample GSM745920 Query DataSets for GSM745920
Status Public on Sep 02, 2013
Title Liver_WT_rep3
Sample type RNA
Source name Liver
Organism Mus musculus
Characteristics strain: mixed background 129sv and C57Bl/6
tissue: liver
genotype/variation: WT
Extracted molecule total RNA
Extraction protocol Standard single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
Label Cyanine 3-CTP
Label protocol Standard Agilent protocol that uses T7 RNA polymerase, which simultaneously amplifies target material and incorporates cyanine 3-labeled CTP (Manual:One-Color Microarray-Based Gene Expression Analysis)
Hybridization protocol Standard Agilent protocol using suggested blocking agent, fragmentation buffer and hybridization buffer. Hybridization run for 17 hours at 65°C. (Manual:One-Color Microarray-Based Gene Expression Analysis)
Scan protocol Scanning was performed using Agilnet scanner at 5 uM resolution, green dye channel
Data processing Signal was extracted using feature expression and data were nornalized to the 75th percentile of of all of non-control probes on the microarray using genespring software
Submission date Jun 21, 2011
Last update date Sep 02, 2013
Contact name Alessandro Provenzani
Phone +390461283094
Organization name University of Trento
Department CIBIO
Lab Laboratory of Genomic Screening
Street address via delle regole 101
City Trento
ZIP/Postal code 38100
Country Italy
Platform ID GPL7202
Series (1)
GSE30139 Role of Per2 in the control of liver glycogen metabolism

Data table header descriptions
RAW Raw data
VALUE Normalized data
PMA Present/Marginal/Absent

Data table
GE_BrightCorner 57728.367 0.23583746 P
DarkCorner 4.9891376 -0.75299597 A
A_52_P616356 8.147618 -0.3954811 A
A_52_P580582 51.4125 0.2358408 P
A_52_P403405 8.321497 -1.3803854 A
A_52_P819156 10.834222 -0.8889351 A
A_51_P331831 170.6726 -0.019608974 P
A_51_P430630 4.5733986 -1.2896938 A
A_52_P502357 4.5744553 -0.90132236 A
A_52_P299964 8.097592 -0.6084738 A
A_51_P356389 11.89552 -0.2360034 A
A_52_P684402 604.1236 0.15399218 P
A_51_P414208 333.42642 2.2178593 P
A_51_P280918 998.7731 0.0668931 P
A_52_P613688 21.464663 -0.63695 A
A_52_P258194 15.0815115 -0.69734573 A
A_52_P229271 103.76571 -0.07927966 P
A_52_P214630 88.34228 -0.6327901 P
A_52_P579519 356.63486 0.1455493 P
A_52_P979997 6.038269 -0.845489 A

Total number of rows: 41252

Table truncated, full table size 1446 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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