|
| Status |
Public on Mar 15, 2012 |
| Title |
Ko Nkx2-5cre, Ezh2f/f E12.5 apx |
| Sample type |
SRA |
| |
|
| Source name |
embryonic cardiomyocytes at E12.5
|
| Organism |
Mus musculus |
| Characteristics |
cell type: cardiomyocyte
age: E12.5
genotype: Ko Nkx2-5cre, Ezh2f/f E12.5 apx
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Full-length transcript RNA-seq library preparation kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
All p-values were corrected for multiple concurrent hypothesis testing using the Benjamini-Hochberg method. We used the false discovery rate < 1% and fold change of greater than 50% as the significance threshold.
|
| |
|
| Submission date |
Jun 15, 2011 |
| Last update date |
Jun 11, 2013 |
| Contact name |
Michael Hsing |
| Organization name |
Children's Hospital Boston
|
| Department |
Cardiology
|
| Street address |
300 Longwood Ave.
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE29992 |
Genome-wide profiling of E12.5 cardiomyocytes RNA expression in both heterozygous control and mutant |
| GSE29997 |
Ezh2 and H3K27me3 in cardiomyocytes |
|
| Relations |
| BioSample |
SAMN02198254 |
