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Sample GSM736581 Query DataSets for GSM736581
Status Public on Jun 03, 2011
Title Stam_MCF-7_1
Sample type SRA
 
Source name MCF-7
Organism Homo sapiens
Characteristics cell: MCF-7
cell organism: Human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757)
cell karyotype: cancer
cell sex: F
replicate: 1
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/Duke/UNC/UTA/EBI_Open_Chromatin:MCF-7_Crawford_protocol.pdf Yale_TFBS(Farnham):MCF-7_Farnham_protocol.pdf UW_Stam:Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (3)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069174
BioSample SAMN00622299
Named Annotation GSM736581_hg19_wgEncodeUwDnaseMcf7RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736581_hg19_wgEncodeUwDnaseMcf7AlnRep1.bam 1.2 Gb (ftp)(http) BAM
GSM736581_hg19_wgEncodeUwDnaseMcf7HotspotsRep1.broadPeak.gz 3.6 Mb (ftp)(http) BROADPEAK
GSM736581_hg19_wgEncodeUwDnaseMcf7PkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM736581_hg19_wgEncodeUwDnaseMcf7RawRep1.bigWig 151.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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