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Sample GSM736566 Query DataSets for GSM736566
Status Public on Jun 03, 2011
Title Stam_K562_2
Sample type SRA
Source name K562
Organism Homo sapiens
Characteristics cell: K562
cell organism: Human
cell description: leukemia
cell karyotype: cancer
cell lineage: "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell sex: F
replicate: 2
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols:
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069159
BioSample SAMN00622284
Named Annotation GSM736566_hg19_wgEncodeUwDnaseK562RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM736566_hg19_wgEncodeUwDnaseK562AlnRep2.bam 1.2 Gb (ftp)(http) BAM
GSM736566_hg19_wgEncodeUwDnaseK562HotspotsRep2.broadPeak.gz 3.5 Mb (ftp)(http) BROADPEAK
GSM736566_hg19_wgEncodeUwDnaseK562PkRep2.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM736566_hg19_wgEncodeUwDnaseK562RawRep2.bigWig 134.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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