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Sample GSM736501

Query DataSets for GSM736501

Status

Public on Jun 03, 2011

Title

Stam_Jurkat_1

Sample type

SRA

Source name

Jurkat

Organism

Homo sapiens

Characteristics

cell: Jurkat
cell organism: Human
cell description: T lymphoblastoid derived from an acute T cell leukemia, "The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM." - ATCC. (PMID: 68013)
cell karyotype: cancer
cell lineage: mesoderm
cell sex: M
replicate: 1

Biomaterial provider

ATCC

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/HudsonAlpha:Jurkat_protocol.pdf UW_Stam:Jurkat_Stam_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Submission date

Jun 02, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (2)

GSE29692	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution

Relations

Reanalyzed by

Reanalyzed by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM736501_hg19_wgEncodeUwDnaseJurkatRawRep1.bigWig

Supplementary file	Size	Download	File type/resource
GSM736501_hg19_wgEncodeUwDnaseJurkatAlnRep1.bam	2.7 Gb	(ftp)(http)	BAM
GSM736501_hg19_wgEncodeUwDnaseJurkatHotspotsRep1.broadPeak.gz	3.0 Mb	(ftp)(http)	BROADPEAK
GSM736501_hg19_wgEncodeUwDnaseJurkatPkRep1.narrowPeak.gz	1.8 Mb	(ftp)(http)	NARROWPEAK
GSM736501_hg19_wgEncodeUwDnaseJurkatRawRep1.bigWig	249.4 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file