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Sample GSM735530 Query DataSets for GSM735530
Status Public on Jul 13, 2011
Title Alzheimer's Disease serum (early stage AD vs. NDC) sample 31
Sample type other
 
Source name AD31
Organism Homo sapiens
Characteristics age: 80
gender: Female
mini mental state exam (mmse) score: 19
sample type: serum
disease state: Alzheimer's Disease
Extracted molecule other
Extraction protocol All serum (PD vs. BC) (PD vs. AD) samples were purchased from commercial biofluid repositiories, drawn and stored under proper conditions, and collected and used with IRB approval.
Label Alexa Fluor 647
Label protocol standard Invitrogen protocol
 
Hybridization protocol Probing and analysis of microarrays was performed with strict adherence to suggested manufacturer protocols. (See Invitrogen and Molecular Devices online.)
Scan protocol Protein microarrays were scanned using a Genepix 4000B microarray scanner at 635nm using default parameters and a pixel size of 5um.
Data processing The GPR files were imported into Invitrogen's Prospector v5.2 microarray analysis software. Individual serum (PD vs. BC) (PD vs. AD) results were characterized into disease and control groups and then linearly normalized for group-to-group analysis of differential expression.
 
Submission date Jun 01, 2011
Last update date Jul 13, 2011
Contact name Robert G Nagele
E-mail(s) nagelero@rowan.edu
Phone 856-566-6083
Organization name UMDNJ-SOM
Department NJISA
Lab Nagele
Street address 2 Medical Center Drive
City Stratford
State/province NJ
ZIP/Postal code 08084
Country USA
 
Platform ID GPL13669
Series (1)
GSE29676 Diagnosis of Alzheimer's Disease Based on Disease-Specific Autoantibody Profiles
Relations
Reanalysis of GSM734867

Data table header descriptions
ID_REF
VALUE Normalized fluorescence intensities are presented in Relative Fluorescent Units (RFUs).

Data table
ID_REF VALUE
1 3.823742564
2 4376.273473
3 2386.143353
4 3863.200076
5 2988.531893
6 18270.55013
7 99072.66831
8 65918.9565
9 91808.38286
10 95912.09673
11 91333.90602
12 9574.444814
13 4275.994491
14 99157.47459
15 81251.48595
16 100764.1077
17 85831.23408
18 63717.07842
19 88696.37859
20 9133.341892

Total number of rows: 9480

Table truncated, full table size 155 Kbytes.




Supplementary file Size Download File type/resource
GSM735530_PA25358_-_AD31.gpr.gz 2.6 Mb (ftp)(http) GPR
Processed data included within Sample table
Processed data are available on Series record

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