GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM733737 Query DataSets for GSM733737
Status Public on Jun 02, 2011
Title Bernstein_HepG2_H3K4me3
Sample type SRA
Source name HepG2
Organism Homo sapiens
Characteristics biomaterial_type: immortalized cell line
line: HepG2
lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: hepatocellular carcinoma
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: 1)abcam; 2)Millipore
antibody vendorid: ab8580; 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000084
replicate: 1,2
softwareversion: ScriptureVPaperR3
Biomaterial provider ATCC
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSM936090
SRA SRX067488
BioSample SAMN00622158
Named Annotation GSM733737_hg19_wgEncodeBroadHistoneHepg2H3k4me3StdSig.bigWig

Supplementary file Size Download File type/resource
GSM733737_hg19_wgEncodeBroadHistoneHepg2H3k4me3StdAlnRep1.bam 304.3 Mb (ftp)(http) BAM
GSM733737_hg19_wgEncodeBroadHistoneHepg2H3k4me3StdAlnRep2.bam 358.0 Mb (ftp)(http) BAM
GSM733737_hg19_wgEncodeBroadHistoneHepg2H3k4me3StdPk.broadPeak.gz 798.6 Kb (ftp)(http) BROADPEAK
GSM733737_hg19_wgEncodeBroadHistoneHepg2H3k4me3StdSig.bigWig 219.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap