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Sample GSM733699 Query DataSets for GSM733699
Status Public on Jun 02, 2011
Title Bernstein_NHLF_H3K36me3
Sample type SRA
Source name NHLF
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: lung fibroblasts
cell karyotype: normal
cell lineage: endoderm
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: abcam
antibody vendorid: ab9050
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000105
replicate: 1,2
softwareversion: ScriptureVPaperR3
Biomaterial provider Lonza
Growth protocol NHLF_Bernstein_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSM936086
SRA SRX067450
BioSample SAMN00622120
Named Annotation GSM733699_hg19_wgEncodeBroadHistoneNhlfH3k36me3StdSig.bigWig

Supplementary file Size Download File type/resource
GSM733699_hg19_wgEncodeBroadHistoneNhlfH3k36me3StdAlnRep1.bam 331.5 Mb (ftp)(http) BAM
GSM733699_hg19_wgEncodeBroadHistoneNhlfH3k36me3StdAlnRep2.bam 733.7 Mb (ftp)(http) BAM
GSM733699_hg19_wgEncodeBroadHistoneNhlfH3k36me3StdPk.broadPeak.gz 743.5 Kb (ftp)(http) BROADPEAK
GSM733699_hg19_wgEncodeBroadHistoneNhlfH3k36me3StdSig.bigWig 396.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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