|
Status |
Public on Jun 02, 2011 |
Title |
Bernstein_K562_H3K27me3 |
Sample type |
SRA |
|
|
Source name |
K562
|
Organism |
Homo sapiens |
Characteristics |
lab: Broad lab description: Bernstein - Broad Institute datatype: ChipSeq datatype description: Chromatin IP Sequencing cell organism: human cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC cell lineage: mesoderm antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3 antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci. antibody vendorname: Millipore antibody vendorid: 07-449 treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. controlid: wgEncodeEH000052 replicate: 1,2 softwareversion: ScriptureVPaperR3
|
Biomaterial provider |
ATCC
|
Growth protocol |
K562_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Submission date |
May 27, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9115 |
Series (2) |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
Reanalyzed by |
GSM936088 |
SRA |
SRX067409 |
BioSample |
SAMN00622079 |
Named Annotation |
GSM733658_hg19_wgEncodeBroadHistoneK562H3k27me3StdSig.bigWig |