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Sample GSM733651 Query DataSets for GSM733651
Status Public on Jun 02, 2011
Title Bernstein_K562_H3K4me2
Sample type SRA
Source name K562
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell lineage: mesoderm
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me2
antibody targetdescription: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.
antibody vendorname: abcam
antibody vendorid: ab7766
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000052
replicate: 1,2
softwareversion: ScriptureVPaperR3
Biomaterial provider ATCC
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
Data processing For data processing details see:
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSM936088
SRA SRX067402
BioSample SAMN00622072
Named Annotation GSM733651_hg19_wgEncodeBroadHistoneK562H3k4me2StdSig.bigWig

Supplementary file Size Download File type/resource
GSM733651_hg19_wgEncodeBroadHistoneK562H3k4me2StdAlnRep1.bam 586.9 Mb (ftp)(http) BAM
GSM733651_hg19_wgEncodeBroadHistoneK562H3k4me2StdAlnRep2.bam 454.8 Mb (ftp)(http) BAM
GSM733651_hg19_wgEncodeBroadHistoneK562H3k4me2StdPk.broadPeak.gz 1.1 Mb (ftp)(http) BROADPEAK
GSM733651_hg19_wgEncodeBroadHistoneK562H3k4me2StdSig.bigWig 265.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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