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Sample GSM733645 Query DataSets for GSM733645
Status Public on Jun 02, 2011
Title Bernstein_HepG2_CTCF
Sample type SRA
Source name HepG2
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: hepatocellular carcinoma
antibody antibodydescription: Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000084
replicate: 1,2
softwareversion: ScriptureVPaperR3
Biomaterial provider ATCC
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSM936090
SRA SRX067396
BioSample SAMN00622067
Named Annotation GSM733645_hg19_wgEncodeBroadHistoneHepg2CtcfStdSig.bigWig

Supplementary file Size Download File type/resource
GSM733645_hg19_wgEncodeBroadHistoneHepg2CtcfStdAlnRep1.bam 101.0 Mb (ftp)(http) BAM
GSM733645_hg19_wgEncodeBroadHistoneHepg2CtcfStdAlnRep2.bam 649.4 Mb (ftp)(http) BAM
GSM733645_hg19_wgEncodeBroadHistoneHepg2CtcfStdPk.broadPeak.gz 1.1 Mb (ftp)(http) BROADPEAK
GSM733645_hg19_wgEncodeBroadHistoneHepg2CtcfStdSig.bigWig 303.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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