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Sample GSM727231 Query DataSets for GSM727231
Status Public on May 07, 2012
Title negative control 72 hrs allstar.b.72.jcp
Sample type RNA
 
Source name SW480
Organism Homo sapiens
Characteristics time point: 72 hrs
cell line: SW480
treatment: negative control
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) + RNase-Free DNase Set (Qiagen)
Label Cy3
Label protocol Quick Amp Labeling Kit (Agilent Technologies, Cat. #: 5190-0442), including MMLV-RT and oligo dT-Promoter primers for cDNA sinthesis, and T7 RNA Polymerase, Cy3-CTP and NTPs for labeling.
 
Hybridization protocol Agilent Gene Expression Hybridization Kit (Agilent Technologies, Cat. #: 5188-5242). Hybridizations were performed on SureHyb chambers on a rotator oven at 65┬║ C for 17 hours.
Scan protocol Agilent G2565BA
Description aneuploid, colon adenocarcinoma cell line
Data processing log2 transformation of signal intensity, quantile normalization
 
Submission date May 19, 2011
Last update date May 07, 2012
Contact name Frank Kramer
E-mail(s) frank.kramer@med.uni-goettingen.de
Organization name University Medical Center G├Âttingen
Department Department of Medical Statistics
Street address Humboldtallee 32
City Goettingen
ZIP/Postal code 37073
Country Germany
 
Platform ID GPL4133
Series (1)
GSE29405 Systems-wide RNAi analysis of CASP8AP2 / FLASH

Data table header descriptions
ID_REF
VALUE quantile normalized log2 signal intensity

Data table
ID_REF VALUE
1 17.017633
2 5.295453
3 5.283259
4 5.310679
5 5.347042
6 5.394742
7 5.378801
8 5.378801
9 5.378801
10 5.378801
11 5.477753
12 11.393418
13 5.916643
14 8.786826
15 6.032419
16 13.28856
17 5.442914
18 8.602189
19 14.90984
20 5.822995

Total number of rows: 45015

Table truncated, full table size 652 Kbytes.




Supplementary file Size Download File type/resource
GSM727231_US45102909_251485048580_S01_GE1_105_Dec08_1_2.txt.gz 9.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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