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Sample GSM72241 Query DataSets for GSM72241
Status Public on Mar 01, 2006
Title Med13 ORF-5
Sample type genomic
 
Channel 1
Source name CHIP IP Med13-5 ORF
Organism Schizosaccharomyces pombe
Characteristics IP sample med13-TAP
Extracted molecule genomic DNA
Label cy5
 
Channel 2
Source name WCE
Organism Schizosaccharomyces pombe
Characteristics WCE of Med13-TAP
Extracted molecule genomic DNA
Label cy3
 
 
Description IgG beads were used for ChIP of chromatin extracts from Med13-TAP cells. Cell cultures were then grown to mid logarithmic growth phase (5 x106 cells/ml) in rich medium before fixation and ChIP. The resulting ChIP DNA was
Data processing cy5/cy3
 
Submission date Aug 26, 2005
Last update date Dec 27, 2005
Contact name Claes M Gustafsson
E-mail(s) claes.gustafsson@medkem.gu.se
Organization name Gothenburg University
Department Department of Medical biochemistry and cell biology
Street address Medcinaregatan 9A
City Gothenburg
ZIP/Postal code 405 30
Country Sweden
 
Platform ID GPL2789
Series (1)
GSE3213 Genome-wide occupancy profile of mediator and the srb8-11 module reveals interactions with coding regions.

Data table header descriptions
ID_REF
VALUE log2 of PRE_VALUE
PRE_VALUE nomarized IP/WCE value

Data table
ID_REF VALUE PRE_VALUE
76 2.4790 5.575
78 -6.6439 0.01
80 3.0988 8.567
82
84
86
88 -6.6439 0.01
90 0
91 0
92 0
93 0
94 0
95 0
96 0
97 0
98 -0.0589 0.96
100 0.0058 1.004
102 -0.0695 0.953
104 1.5917 3.014
106 1.7325 3.323

Total number of rows: 6469

Table truncated, full table size 104 Kbytes.




Supplementary data files not provided

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