|
| Status |
Public on Mar 01, 2024 |
| Title |
MM09, RNAseq, biorep1 |
| Sample type |
SRA |
| |
|
| Source name |
Bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Bone marrow
disease state: Multiple Myeloma
tumor stage: Newly Diagnosed MM
cell type: Plasma Cell Myeloma
Sex: Female
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Bone marrow (BM) samples derived from patients diagnosed with MM. CD138 positive plasma cells purified from BM aspirates using immunomagnetic bead selection. Total RNA extracted from CD138+ cells using miRNeasy Mini Kit followed by Ribosomal RNA depletion with NEB Ribo-Zero Plus rRNA Depletion Kit.
NEBNext® UltraTM II Directional RNA Library Prep Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
JIA.MM09
|
| Data processing |
counts across GENCODE v42 features by featureCounts
Assembly: hg38
Supplementary files format and content: tsv, counts generated by featureCounts
|
| |
|
| Submission date |
Apr 21, 2023 |
| Last update date |
Mar 01, 2024 |
| Contact name |
Yinghui Li |
| E-mail(s) |
liyh@ntu.edu.sg
|
| Organization name |
Nanyang Technological University
|
| Department |
School of Biological Sciences
|
| Lab |
05n-21
|
| Street address |
60 Nanyang Drive
|
| City |
Singapore |
| State/province |
Singapore |
| ZIP/Postal code |
637551 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL20301 |
| Series (2) |
| GSE230296 |
Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma [RNA2] |
| GSE230526 |
Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma |
|
| Relations |
| BioSample |
SAMN34290759 |
| SRA |
SRX20051603 |
