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Sample GSM7177602 Query DataSets for GSM7177602
Status Public on Dec 01, 2023
Title FHBT1a_B7_SARQ
Sample type SRA
 
Source name primary mouse bladder urothelial cells
Organism Mus musculus
Characteristics cell line: primary mouse bladder urothelial cells
cell type: bladder tumor cells
histology: Sarcomatoid
Extracted molecule total RNA
Extraction protocol RNA was harvested using RNeasy FFPE kit (Qiagen).
The RNA-seq library was prepared using Takara SMARTer Pico kit and sequenced on NovaSeq S4 PE100 by Medgenome company
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing UCSC TOIL processing pipeline was used to align the reads to the reference genome and generating count matrix files.
Assembly: hg38
Supplementary files format and content: tab-delimited text files include raw count values for each Sample
 
Submission date Apr 14, 2023
Last update date Dec 01, 2023
Contact name John K. Lee
E-mail(s) jklee5@fredhutch.org
Phone 2066673652
Organization name Fred Hutch Cancer Research Ctr
Street address 1100 Fairview Ave N Rm E2-430
City Seattle
State/province Washington
ZIP/Postal code 98101
Country USA
 
Platform ID GPL24247
Series (2)
GSE229780 Combinatorial genetic strategy accelerates the discovery of cancer genotype-phenotype associations [RNA-Seq]
GSE229783 Combinatorial genetic strategy accelerates the discovery of cancer genotype-phenotype associations
Relations
SRA SRX19976474
BioSample SAMN34192791

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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