|
Status |
Public on Dec 01, 2023 |
Title |
FHBT1a_B7_SARQ |
Sample type |
SRA |
|
|
Source name |
primary mouse bladder urothelial cells
|
Organism |
Mus musculus |
Characteristics |
cell line: primary mouse bladder urothelial cells cell type: bladder tumor cells histology: Sarcomatoid
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was harvested using RNeasy FFPE kit (Qiagen). The RNA-seq library was prepared using Takara SMARTer Pico kit and sequenced on NovaSeq S4 PE100 by Medgenome company
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
UCSC TOIL processing pipeline was used to align the reads to the reference genome and generating count matrix files. Assembly: hg38 Supplementary files format and content: tab-delimited text files include raw count values for each Sample
|
|
|
Submission date |
Apr 14, 2023 |
Last update date |
Dec 01, 2023 |
Contact name |
John K. Lee |
E-mail(s) |
jklee5@fredhutch.org
|
Phone |
2066673652
|
Organization name |
Fred Hutch Cancer Research Ctr
|
Street address |
1100 Fairview Ave N Rm E2-430
|
City |
Seattle |
State/province |
Washington |
ZIP/Postal code |
98101 |
Country |
USA |
|
|
Platform ID |
GPL24247 |
Series (2) |
GSE229780 |
Combinatorial genetic strategy accelerates the discovery of cancer genotype-phenotype associations [RNA-Seq] |
GSE229783 |
Combinatorial genetic strategy accelerates the discovery of cancer genotype-phenotype associations |
|
Relations |
SRA |
SRX19976474 |
BioSample |
SAMN34192791 |