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Sample GSM714159 Query DataSets for GSM714159
Status Public on Jun 01, 2011
Title BT6
Sample type RNA
Source name Large airway epithelial cells
Organism Homo sapiens
Characteristics cell type: large airway epithelial cells
disease state: Lung Cancer
gender: M
age: 76
packyears: 75-100
smoking status: Former
years passed since quitting: 7
cancer stage: IB
histology: Squamous Cell Carcinoma
Extracted molecule total RNA
Extraction protocol RNA was extracted by using TRIzol Reagent (Invitrogen) according to the manufacturer's protocol
Label Biotin
Label protocol Affymetrix Suggested Protocol
Hybridization protocol Affymetrix Suggested Protocol
Scan protocol Affymetrix Suggested Protocol
Data processing RMA (Robust Multichip Average) generated expression value using Ensembl v58 CDF file
Submission date Apr 25, 2011
Last update date Jun 01, 2011
Contact name Avrum Spira
Phone 617-638-4860
Fax 617-536-8093
Organization name Boston University Medical Center
Department Pulmonary and Critical Care Medicine
Lab Pulmonomics Lab
Street address 715 Albany Street, R304
City Boston
State/province MA
ZIP/Postal code 02118
Country USA
Platform ID GPL13447
Series (2)
GSE28835 Large airway epithelial cells from cigarette smokers with and without lung cancer undergoing flexible bronchoscopy in the operating room for resection of a suspicious lung nodule
GSE29007 Human Large Airway Epithelial Cells from healthy never and current smoker and smokers with and without lung cancer

Data table header descriptions
VALUE log2 RMA signal

Data table
AFFX-BioB-3_at 8.666790182
AFFX-BioB-5_at 8.763480243
AFFX-BioB-M_at 9.00914333
AFFX-BioC-3_at 10.25666034
AFFX-BioC-5_at 9.99728743
AFFX-BioDn-3_at 12.13357871
AFFX-BioDn-5_at 11.09765136
AFFX-CreX-3_at 13.50217334
AFFX-CreX-5_at 13.15747594
AFFX-DapX-3_at 10.71388623
AFFX-DapX-5_at 9.403007873
AFFX-DapX-M_at 10.65959768
AFFX-HSAC07/X00351_3_at 12.54071361
AFFX-HSAC07/X00351_5_at 9.908074666
AFFX-HSAC07/X00351_M_at 11.14644531
AFFX-hum_alu_at 14.40483763
AFFX-HUMGAPDH/M33197_3_at 11.87926861
AFFX-HUMGAPDH/M33197_5_at 10.94788659
AFFX-HUMGAPDH/M33197_M_at 11.41192288
AFFX-HUMISGF3A/M97935_3_at 9.329908638

Total number of rows: 11914

Table truncated, full table size 359 Kbytes.

Supplementary file Size Download File type/resource
GSM714159.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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