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Sample GSM714153 Query DataSets for GSM714153
Status Public on Jun 01, 2011
Title BT11
Sample type RNA
Source name Large airway epithelial cells
Organism Homo sapiens
Characteristics cell type: large airway epithelial cells
disease state: Lung Cancer
gender: F
age: 87
packyears: 50
smoking status: Former
years passed since quitting: 5
cancer stage: IA
histology: Adenocarcinoma
Extracted molecule total RNA
Extraction protocol RNA was extracted by using TRIzol Reagent (Invitrogen) according to the manufacturer's protocol
Label Biotin
Label protocol Affymetrix Suggested Protocol
Hybridization protocol Affymetrix Suggested Protocol
Scan protocol Affymetrix Suggested Protocol
Data processing RMA (Robust Multichip Average) generated expression value using Ensembl v58 CDF file
Submission date Apr 25, 2011
Last update date Jun 01, 2011
Contact name Avrum Spira
Phone 617-638-4860
Fax 617-536-8093
Organization name Boston University Medical Center
Department Pulmonary and Critical Care Medicine
Lab Pulmonomics Lab
Street address 715 Albany Street, R304
City Boston
State/province MA
ZIP/Postal code 02118
Country USA
Platform ID GPL13447
Series (2)
GSE28835 Large airway epithelial cells from cigarette smokers with and without lung cancer undergoing flexible bronchoscopy in the operating room for resection of a suspicious lung nodule
GSE29007 Human Large Airway Epithelial Cells from healthy never and current smoker and smokers with and without lung cancer

Data table header descriptions
VALUE log2 RMA signal

Data table
AFFX-BioB-3_at 8.831978822
AFFX-BioB-5_at 9.067029094
AFFX-BioB-M_at 9.217376142
AFFX-BioC-3_at 10.46825705
AFFX-BioC-5_at 10.28740359
AFFX-BioDn-3_at 12.27756439
AFFX-BioDn-5_at 11.24530458
AFFX-CreX-3_at 13.52546066
AFFX-CreX-5_at 13.2500758
AFFX-DapX-3_at 11.26044117
AFFX-DapX-5_at 10.11515585
AFFX-DapX-M_at 11.29716082
AFFX-HSAC07/X00351_3_at 12.59353937
AFFX-HSAC07/X00351_5_at 9.912386271
AFFX-HSAC07/X00351_M_at 11.06295566
AFFX-hum_alu_at 14.40662972
AFFX-HUMGAPDH/M33197_3_at 11.95837133
AFFX-HUMGAPDH/M33197_5_at 10.81152467
AFFX-HUMGAPDH/M33197_M_at 11.30470221
AFFX-HUMISGF3A/M97935_3_at 9.791615146

Total number of rows: 11914

Table truncated, full table size 359 Kbytes.

Supplementary file Size Download File type/resource
GSM714153.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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