|
| Status |
Public on Jul 09, 2024 |
| Title |
32-NT-137964 |
| Sample type |
SRA |
| |
|
| Source name |
32-NT-137964
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: CBNK
treatment: 32-NT-137964 NK cells alone
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Libraries were sequenced 2 x 100 bp on an Illumina NovaSeq6000 to obtain at least 50 million high quality mapping reads per sample.
By applying RNA and ATAC sequencing, we want to investigate the epigenetic factors that contributing for IL-21-induced memory formation in NK cells
|
| |
|
| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
BulkATACseq
bulkATAC_rawCount.csv
|
| Data processing |
Cellranger mkfastq v3.01 to generate FASTQ
Cellranger count v3.01 to generate count matrix
Assembly: GRCh38
Supplementary files format and content: [Cellranger files] comprising a MatrixMarket file (matrix.mtx) and two tab separated metadata files (barcodes.tsv, features.tsv)
|
| |
|
| Submission date |
Mar 10, 2023 |
| Last update date |
Jul 09, 2024 |
| Contact name |
Katayoun Rezvani |
| E-mail(s) |
krezvani@mdanderson.org
|
| Organization name |
The University of Texas MD Anderson Cancer Center
|
| Street address |
1515 Holcombe Blvd
|
| City |
HOUSTON |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE227098 |
IL-21 induces antitumor response in NK cells via CEBPD |
|
| Relations |
| BioSample |
SAMN33715511 |
| SRA |
SRX19635520 |
