|
| Status |
Public on Jul 09, 2024 |
| Title |
R986-28-28-IL15CEBPD-KI-137964 |
| Sample type |
SRA |
| |
|
| Source name |
28-IL15CEBPDgfp137964
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: CBNK
treatment: 28-IL15CEBPD-KI 137964 NK cells alone
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries were prepared using Illumina next generation RNA sequencing .
By applying RNA and ATAC sequencing, we want to investigate the epigenetic factors that contributing for IL-21-induced memory formation in NK cells
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
BulkRNAseq
bulkRNA_rawCount.csv
|
| Data processing |
Cellranger mkfastq v3.01 to generate FASTQ
Cellranger count v3.01 to generate count matrix
Assembly: GRCh38
Supplementary files format and content: [Cellranger files] comprising a MatrixMarket file (matrix.mtx) and two tab separated metadata files (barcodes.tsv, features.tsv)
|
| |
|
| Submission date |
Mar 10, 2023 |
| Last update date |
Jul 09, 2024 |
| Contact name |
Katayoun Rezvani |
| E-mail(s) |
krezvani@mdanderson.org
|
| Organization name |
The University of Texas MD Anderson Cancer Center
|
| Street address |
1515 Holcombe Blvd
|
| City |
HOUSTON |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE227098 |
IL-21 induces antitumor response in NK cells via CEBPD |
|
| Relations |
| BioSample |
SAMN33715531 |
| SRA |
SRX19635500 |
