|
| Status |
Public on Jun 02, 2023 |
| Title |
01-030_C3D1 [R190240] |
| Sample type |
SRA |
| |
|
| Source name |
tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: tumor tissue
time point: After 1 month of NP137 treatment
sample type: frozen sample
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Patient microbiopsies RNA were extracted with RNA easy FFPE kit (Qiagen)
RNA-Seq library was produced with Illumina TruSeq® Exome kit (RNA Library Prep for Enrichment & TruSeq® RNA Enrichment) according to the manufacturer (0.1µg of RNA for the library prep).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
Patient_Raw_Count.csv
Patient_DeSEQ2Normalized_Count.csv
|
| Data processing |
Fastq files were processed with Star, v2.5.2b (mapped on the reference genome:gencode.v27) and read count were analysed with R (ver 4.2.0) package DeSEQ2 (ver 1.36.0).
Assembly: gencode.v27
Supplementary files format and content: tab delimited file containing raw count
Supplementary files format and content: tab delimited file containing DeSEQ2 normalized count
|
| |
|
| Submission date |
Feb 21, 2023 |
| Last update date |
Jun 02, 2023 |
| Contact name |
Nicolas Rama |
| E-mail(s) |
nicolas.rama@lyon.unicancer.fr
|
| Organization name |
CRCL
|
| Street address |
28 rue Laennec
|
| City |
LYON |
| ZIP/Postal code |
69890 |
| Country |
France |
| |
|
| Platform ID |
GPL24676 |
| Series (2) |
| GSE225687 |
Netrin-1 blockade induces tumor growth inhibition and EMT reversion in endometrial cancer [RNAseqPatient] |
| GSE225691 |
Netrin-1 blockade induces tumor growth inhibition and EMT reversion in endometrial cancer. |
|
| Relations |
| BioSample |
SAMN33391554 |
| SRA |
SRX19452291 |
