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Sample GSM6929162 Query DataSets for GSM6929162
Status Public on May 24, 2024
Title HDMB03_Ctrl_1
Sample type SRA
Source name T Milde et al., J Neurooncol 2012
Organism Homo sapiens
Characteristics cell line: Human HDMB03 group 3 medulloblastoma cell line
treatment: scramble control
Growth protocol Tumorspheres were grown in StemPro NSC Serum-Free Medium on ultra-low attachment tissue culture plates
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from all samples using the Norgen RNA extraction kit (Norgen Biotek),
Library constructed with NEB Ultra II directional RNA library prep kit with poly-A selection module
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Data processing Aligned with STAR v2.5.2b
Assembly: Hg19
Supplementary files format and content: count matrix (txt. File)
Submission date Jan 12, 2023
Last update date May 24, 2024
Contact name Michael D Taylor
Organization name The Hospital for Sick Children
Department Development and Stem Cell Biology
Street address 686 Bay St
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
Platform ID GPL18573
Series (1)
GSE222699 The OTX2-regulated alternative splicing landscape controls differentiation and reconstitutes the developmental origins of Group 3 medulloblastoma
BioSample SAMN32691262
SRA SRX19013818

Supplementary file Size Download File type/resource
GSM6929162_HDMB03_CTRL_1.txt.gz 249.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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