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Sample GSM692820 Query DataSets for GSM692820
Status Public on Sep 14, 2011
Title R3: corneas dissected 3 days after removal of lens at stage 50
Sample type RNA
 
Source name corneas dissected 3 days after removal of lens at stage 50
Organism Xenopus laevis
Characteristics developmental stage: stage 50, Nieuwkoop and Faber
genotype: wildtype
tissue: cornea
Growth protocol tadpoles were cultured at 20 degrees in 0.1 x MMR salts overnight and then in 25 degrees in water until harvested at day 3 after surgery
Extracted molecule total RNA
Extraction protocol RNA later, Ambion RNAqueous micro kit used to extract RNA and treat with DNAse I as protocol.
Label biotin
Label protocol Nugen WT-Ovation pico kit
 
Hybridization protocol WS2v4_450
Scan protocol 7G Plus GeneChip Scanner 3000
Description XenLensRegR3
Data processing RMA normalised using GenePattern software
 
Submission date Mar 17, 2011
Last update date Sep 14, 2011
Contact name Caroline Beck
E-mail(s) caroline.beck@otago.ac.nz
Organization name University of Otago
Department Zoology
Street address 340 Great King Street
City Dunedin
ZIP/Postal code 9054
Country New Zealand
 
Platform ID GPL1318
Series (1)
GSE28014 Identification of genes associated with lens regeneration from the cornea in Xenopus laevis tadpoles

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 185.26399
AFFX-BioB-5_at 109.141136
AFFX-BioB-M_at 150.08995
AFFX-BioC-3_at 304.32202
AFFX-BioC-5_at 208.99898
AFFX-BioDn-3_at 1633.1357
AFFX-BioDn-5_at 419.90106
AFFX-CreX-3_at 3465.291
AFFX-CreX-5_at 2485.5266
AFFX-DapX-3_at 1.4522458
AFFX-DapX-5_at 1.3145598
AFFX-DapX-M_at 1.0203997
AFFX-LysX-3_at 1.0560477
AFFX-LysX-5_at 0.9668454
AFFX-LysX-M_at 1.3604552
AFFX-PheX-3_at 2.3378487
AFFX-PheX-5_at 0.7520373
AFFX-PheX-M_at 1.8437574
AFFX-r2-Bs-dap-3_at 1.0052409
AFFX-r2-Bs-dap-5_at 1.0631536

Total number of rows: 15611

Table truncated, full table size 403 Kbytes.




Supplementary file Size Download File type/resource
GSM692820_XenLensRegR3.CEL.gz 1.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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