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Sample GSM692819 Query DataSets for GSM692819
Status Public on Sep 14, 2011
Title R2: corneas dissected 3 days after removal of lens at stage 50
Sample type RNA
 
Source name corneas dissected 3 days after removal of lens at stage 50
Organism Xenopus laevis
Characteristics developmental stage: stage 50, Nieuwkoop and Faber
genotype: wildtype
tissue: cornea
Growth protocol tadpoles were cultured at 20 degrees in 0.1 x MMR salts overnight and then in 25 degrees in water until harvested at day 3 after surgery
Extracted molecule total RNA
Extraction protocol RNA later, Ambion RNAqueous micro kit used to extract RNA and treat with DNAse I as protocol.
Label biotin
Label protocol Nugen WT-Ovation pico kit
 
Hybridization protocol WS2v4_450
Scan protocol 7G Plus GeneChip Scanner 3000
Description XenLensRegR2
Data processing RMA normalised using GenePattern software
 
Submission date Mar 17, 2011
Last update date Sep 14, 2011
Contact name Caroline Beck
E-mail(s) caroline.beck@otago.ac.nz
Organization name University of Otago
Department Zoology
Street address 340 Great King Street
City Dunedin
ZIP/Postal code 9054
Country New Zealand
 
Platform ID GPL1318
Series (1)
GSE28014 Identification of genes associated with lens regeneration from the cornea in Xenopus laevis tadpoles

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 141.68433
AFFX-BioB-5_at 85.112915
AFFX-BioB-M_at 103.36667
AFFX-BioC-3_at 221.10522
AFFX-BioC-5_at 152.95337
AFFX-BioDn-3_at 1372.2542
AFFX-BioDn-5_at 338.51
AFFX-CreX-3_at 2709.1245
AFFX-CreX-5_at 2074.9998
AFFX-DapX-3_at 1.920524
AFFX-DapX-5_at 1.2862457
AFFX-DapX-M_at 0.98321754
AFFX-LysX-3_at 0.9683217
AFFX-LysX-5_at 0.9327577
AFFX-LysX-M_at 0.97911143
AFFX-PheX-3_at 1.8492634
AFFX-PheX-5_at 0.6735097
AFFX-PheX-M_at 1.1270411
AFFX-r2-Bs-dap-3_at 0.92809194
AFFX-r2-Bs-dap-5_at 1.0265749

Total number of rows: 15611

Table truncated, full table size 403 Kbytes.




Supplementary file Size Download File type/resource
GSM692819_XenLensRegR2.CEL.gz 1.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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