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Sample GSM692818 Query DataSets for GSM692818
Status Public on Sep 14, 2011
Title R1: corneas dissected 3 days after removal of lens at stage 50
Sample type RNA
Source name corneas dissected 3 days after removal of lens at stage 50
Organism Xenopus laevis
Characteristics developmental stage: stage 50, Nieuwkoop and Faber
genotype: wildtype
tissue: cornea
Growth protocol tadpoles were cultured at 20 degrees in 0.1 x MMR salts overnight and then in 25 degrees in water until harvested at day 3 after surgery
Extracted molecule total RNA
Extraction protocol RNA later, Ambion RNAqueous micro kit used to extract RNA and treat with DNAse I as protocol.
Label biotin
Label protocol Nugen WT-Ovation pico kit
Hybridization protocol WS2v4_450
Scan protocol 7G Plus GeneChip Scanner 3000
Description XenLensRegR1
Data processing RMA normalised using GenePattern software
Submission date Mar 17, 2011
Last update date Sep 14, 2011
Contact name Caroline Beck
Organization name University of Otago
Department Zoology
Street address 340 Great King Street
City Dunedin
ZIP/Postal code 9054
Country New Zealand
Platform ID GPL1318
Series (1)
GSE28014 Identification of genes associated with lens regeneration from the cornea in Xenopus laevis tadpoles

Data table header descriptions
VALUE RMA signal

Data table
AFFX-BioB-3_at 140.02844
AFFX-BioB-5_at 83.58043
AFFX-BioB-M_at 112.8239
AFFX-BioC-3_at 232.736
AFFX-BioC-5_at 166.90569
AFFX-BioDn-3_at 1370.0292
AFFX-BioDn-5_at 320.21805
AFFX-CreX-3_at 3069.5845
AFFX-CreX-5_at 2207.2131
AFFX-DapX-3_at 2.2840607
AFFX-DapX-5_at 1.1450617
AFFX-DapX-M_at 1.0907538
AFFX-LysX-3_at 0.98516953
AFFX-LysX-5_at 0.9429518
AFFX-LysX-M_at 1.1922618
AFFX-PheX-3_at 2.2965949
AFFX-PheX-5_at 0.73056847
AFFX-PheX-M_at 1.1715099
AFFX-r2-Bs-dap-3_at 0.9582083
AFFX-r2-Bs-dap-5_at 1.0706111

Total number of rows: 15611

Table truncated, full table size 403 Kbytes.

Supplementary file Size Download File type/resource
GSM692818_XenLensRegR1.CEL.gz 1.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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