GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM692817 Query DataSets for GSM692817
Status Public on Sep 14, 2011
Title L3: whole lens excised stage 50
Sample type RNA
Source name whole lens excised stage 50
Organism Xenopus laevis
Characteristics developmental stage: stage 50, Nieuwkoop and Faber
genotype: wildtype
tissue: whole lens
Growth protocol tadpoles were cultured at 20 degrees in 0.1 x MMR salts overnight and then in 25 degrees in water until harvested at day 3 after surgery
Extracted molecule total RNA
Extraction protocol RNA later, Ambion RNAqueous micro kit used to extract RNA and treat with DNAse I as protocol.
Label biotin
Label protocol Nugen WT-Ovation pico kit
Hybridization protocol WS2v4_450
Scan protocol 7G Plus GeneChip Scanner 3000
Description XenLensRegL3
Data processing RMA normalised using GenePattern software
Submission date Mar 17, 2011
Last update date Sep 14, 2011
Contact name Caroline Beck
Organization name University of Otago
Department Zoology
Street address 340 Great King Street
City Dunedin
ZIP/Postal code 9054
Country New Zealand
Platform ID GPL1318
Series (1)
GSE28014 Identification of genes associated with lens regeneration from the cornea in Xenopus laevis tadpoles

Data table header descriptions
VALUE RMA signal

Data table
AFFX-BioB-3_at 217.24998
AFFX-BioB-5_at 152.40442
AFFX-BioB-M_at 194.6053
AFFX-BioC-3_at 322.06244
AFFX-BioC-5_at 265.2725
AFFX-BioDn-3_at 1366.5239
AFFX-BioDn-5_at 448.4072
AFFX-CreX-3_at 3052.854
AFFX-CreX-5_at 2258.8398
AFFX-DapX-3_at 3.7013528
AFFX-DapX-5_at 1.3051791
AFFX-DapX-M_at 1.1919132
AFFX-LysX-3_at 1.7541367
AFFX-LysX-5_at 1.0552696
AFFX-LysX-M_at 1.3540926
AFFX-PheX-3_at 4.543374
AFFX-PheX-5_at 5.6009703
AFFX-PheX-M_at 1.5771087
AFFX-r2-Bs-dap-3_at 1.1045257
AFFX-r2-Bs-dap-5_at 1.2328798

Total number of rows: 15611

Table truncated, full table size 402 Kbytes.

Supplementary file Size Download File type/resource
GSM692817_XenLensRegL3.CEL.gz 1.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap