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Sample GSM692815 Query DataSets for GSM692815
Status Public on Sep 14, 2011
Title L1: whole lens excised stage 50
Sample type RNA
 
Source name whole lens excised stage 50
Organism Xenopus laevis
Characteristics developmental stage: stage 50, Nieuwkoop and Faber
genotype: wildtype
tissue: whole lens
Growth protocol tadpoles were cultured at 20 degrees in 0.1 x MMR salts overnight and then in 25 degrees in water until harvested at day 3 after surgery
Extracted molecule total RNA
Extraction protocol RNA later, Ambion RNAqueous micro kit used to extract RNA and treat with DNAse I as protocol.
Label biotin
Label protocol Nugen WT-Ovation pico kit
 
Hybridization protocol WS2v4_450
Scan protocol 7G Plus GeneChip Scanner 3000
Description XenLensRegL1
Data processing RMA normalised using GenePattern software
 
Submission date Mar 17, 2011
Last update date Sep 14, 2011
Contact name Caroline Beck
E-mail(s) caroline.beck@otago.ac.nz
Organization name University of Otago
Department Zoology
Street address 340 Great King Street
City Dunedin
ZIP/Postal code 9054
Country New Zealand
 
Platform ID GPL1318
Series (1)
GSE28014 Identification of genes associated with lens regeneration from the cornea in Xenopus laevis tadpoles

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 234.04527
AFFX-BioB-5_at 153.90405
AFFX-BioB-M_at 186.47543
AFFX-BioC-3_at 325.0389
AFFX-BioC-5_at 258.41492
AFFX-BioDn-3_at 1461.5999
AFFX-BioDn-5_at 431.62607
AFFX-CreX-3_at 2985.0837
AFFX-CreX-5_at 2044.7051
AFFX-DapX-3_at 3.3380728
AFFX-DapX-5_at 1.5229284
AFFX-DapX-M_at 1.4286069
AFFX-LysX-3_at 2.0566838
AFFX-LysX-5_at 1.1746706
AFFX-LysX-M_at 2.5328345
AFFX-PheX-3_at 4.1717463
AFFX-PheX-5_at 5.8549395
AFFX-PheX-M_at 1.4627663
AFFX-r2-Bs-dap-3_at 1.1592194
AFFX-r2-Bs-dap-5_at 1.3435546

Total number of rows: 15611

Table truncated, full table size 402 Kbytes.




Supplementary file Size Download File type/resource
GSM692815_XenLensRegL1.CEL.gz 1.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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