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Sample GSM686016 Query DataSets for GSM686016
Status Public on Jun 22, 2012
Title GTL16 R1 clone, copy number variation SNP6.0
Sample type genomic
Source name GTL16 R1 clone
Organism Homo sapiens
Characteristics cell line: GTL16 R1 clone
origin: gastric
resistant: PF-04217903
Extracted molecule genomic DNA
Extraction protocol DNA were isolated using a DNeasy kit (Qiagen, Germantown, MD).
Label biotin
Label protocol Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Hybridization protocol Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Scan protocol Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Data processing Affymetrix SNP6.0 data were processed using the aroma.affymetrix R package according to the methods of H. Bengtsson et al., (Bengtsson, Irizarry et al. 2008 [PMID 18204055]).
Submission date Mar 04, 2011
Last update date Jun 22, 2012
Contact name Keith A Ching
Organization name Pfizer, Inc.
Department Computational Sciences
Street address 10777 Science Center Dr.
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL6801
Series (1)
GSE27692 Molecular profiles for GTL16 cell lines

Data table header descriptions
VALUE Normalized probeset summaries CES (chip effects set)

Data table
SNP_A-2131660 5599.216796875
SNP_A-1967418 1976.24487304688
SNP_A-1969580 6966.15625
SNP_A-4263484 4315.826171875
SNP_A-1978185 2937.66723632812
SNP_A-4264431 1675.75610351562
SNP_A-1980898 1394.76037597656
SNP_A-1983139 2087.466796875
SNP_A-4265735 1876.31518554688
SNP_A-1995832 1910.54528808594
SNP_A-1995893 4655.1298828125
SNP_A-1997689 5992.54150390625
SNP_A-1997709 2293.04736328125
SNP_A-1997896 1919.37268066406
SNP_A-1997922 1855.57336425781
SNP_A-2000230 4623.08740234375
SNP_A-2000332 8112.9892578125
SNP_A-2000337 3362.63720703125
SNP_A-2000342 4179.00537109375
SNP_A-4268172 2201.49560546875

Total number of rows: 1877772

Table truncated, full table size 52521 Kbytes.

Supplementary file Size Download File type/resource
GSM686016.CEL.gz 27.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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