GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM6850225 Query DataSets for GSM6850225
Status Public on Jun 08, 2023
Title ACRI355
Sample type SRA
Source name Peptide affinity captured plasma extracellular RNA
Organism Homo sapiens
Characteristics condition: Non-affected individual
Extracted molecule total RNA
Extraction protocol miRVana miRNA isolation kit
CleanTag Small RNA library prep kit
Library strategy ncRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Ion Torrent Proton
Data processing Raw reads from sRNAseq were processed with the Torrent Suite Software (v5.4.0), which runs the Torrent Mapping Alignment Program (TMAP).
Fastq's adapters removal and quality trimming with TrimGalore (v 0.6.5).
Alignment was performed using STAR (version 2.7.0f) to the human genome GRCh38 version
Reads Counts performed using Derfinder (version 1.18.9) in R(v3.4.1)
Counts normalized with TMM and differential expression analysis was performed using the Bioconductor package edgeR (v3.18.1)
Assembly: Human genome GRCh38
Supplementary files format and content: Raw reads counts in a csv (or tsv) format
Submission date Dec 16, 2022
Last update date Jun 08, 2023
Contact name Eric P Allain
Phone 5068697347
Organization name Vitalité Health Network
Department Medical Genetics
Lab Bioinformatics
Street address 330 University ave
City Moncton
State/province New Brunswick
ZIP/Postal code E1C 2Z3
Country Canada
Platform ID GPL17303
Series (1)
GSE221185 Small RNA sequencing analysis of peptide-affinity isolated plasma extracellular vesicles distinguishes pancreatic cancer patients from non-affected individuals
BioSample SAMN32277956
SRA SRX18737527

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap